To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("plrs")

In most cases, you don't need to download the package archive at all.

plrs

   

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see plrs.

Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

Bioconductor version: 3.0

The present package implements a flexible framework for modeling the relationship between DNA copy number and gene expression data using Piecewise Linear Regression Splines (PLRS).

Author: Gwenael G.R. Leday

Maintainer: Gwenael G.R. Leday to <gleday at few.vu.nl>

Citation (from within R, enter citation("plrs")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("plrs")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plrs")

 

PDF R Script plrs
PDF   Reference Manual

Details

biocViews Regression, Software
Version 1.6.0
In Bioconductor since BioC 2.12 (R-3.0) (3 years)
License GPL (>=2.0)
Depends R (>= 2.10), Biobase
Imports BiocGenerics, CGHbase, graphics, grDevices, ic.infer, marray, methods, quadprog, Rcsdp, stats, stats4, utils
LinkingTo
Suggests mvtnorm, methods
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source plrs_1.6.0.tar.gz
Windows Binary plrs_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) plrs_1.6.0.tgz
Mac OS X 10.9 (Mavericks) plrs_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/plrs/tree/release-3.0
Package Short Url http://bioconductor.org/packages/plrs/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center