curatedTBData

DOI: 10.18129/B9.bioc.curatedTBData    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see curatedTBData.

Curation of existing 49 tuberculosis transcriptomic studies

Bioconductor version: 3.14

The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.

Author: Xutao Wang [aut, cre], W. Evan Johnson [aut], Prasad Patil [aut]

Maintainer: Xutao Wang <xutaow at bu.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedTBData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedTBData")

 

HTML	R Script	curatedTBData
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, GEO, Homo_sapiens_Data
Version	1.0.0
License	MIT + file LICENSE
Depends	R (>= 4.1.0)
Imports	AnnotationHub, ExperimentHub, MultiAssayExperiment, rlang, stats
LinkingTo
Suggests	BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat
SystemRequirements
Enhances
URL	https://github.com/compbiomed/curatedTBData
BugReports	https://github.com/compbiomed/curatedTBData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	curatedTBData_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/curatedTBData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/curatedTBData
Package Short Url	https://bioconductor.org/packages/curatedTBData/
Package Downloads Report	Download Stats