CNORfeeder

Integration of CellNOptR to add missing links

Bioconductor version: Release (3.19)

This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.

Author: Federica Eduati [aut], Enio Gjerga [ctb], Attila Gabor [cre]

Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>

Citation (from within R, enter citation("CNORfeeder")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORfeeder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfeeder")

Main vignette:Playing with networks using CNORfeeder	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBasedAssays, CellBiology, NetworkInference, Proteomics, Software
Version	1.44.0
In Bioconductor since	BioC 2.12 (R-3.0) (11.5 years)
License	GPL-3
Depends	R (>= 3.6.0), CellNOptR(>= 1.4.0), graph
Imports
System Requirements
URL

Suggests	minet, Rgraphviz, RUnit, BiocGenerics, igraph
Linking To
Enhances	MEIGOR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNORfeeder_1.44.0.tar.gz
Windows Binary (x86_64)	CNORfeeder_1.44.0.zip (64-bit only)
macOS Binary (x86_64)	CNORfeeder_1.44.0.tgz
macOS Binary (arm64)	CNORfeeder_1.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNORfeeder
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNORfeeder
Bioc Package Browser	https://code.bioconductor.org/browse/CNORfeeder/
Package Short Url	https://bioconductor.org/packages/CNORfeeder/
Package Downloads Report	Download Stats