alevinQC
Generate QC Reports For Alevin Output
Bioconductor version: Release (3.19)
Generate QC reports summarizing the output from an alevin, alevin-fry, or simpleaf run. Reports can be generated as html or pdf files, or as shiny applications.
Author: Charlotte Soneson [aut, cre] 
, Avi Srivastava [aut], Rob Patro [aut], Dongze He [aut]
Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>
Citation (from within R, enter
citation("alevinQC")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alevinQC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("alevinQC")| alevinQC | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | QualityControl, SingleCell, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0) |
| Imports | rmarkdown (>= 2.5), tools, methods, ggplot2 (>= 3.4.0), GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport(>= 1.17.4), cowplot, rlang, Rcpp |
| System Requirements | C++11 |
| URL | https://github.com/csoneson/alevinQC |
| Bug Reports | https://github.com/csoneson/alevinQC/issues |
See More
| Suggests | knitr, BiocStyle, testthat (>= 3.0.0), BiocManager |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | alevinQC_1.20.0.tar.gz |
| Windows Binary (x86_64) | alevinQC_1.20.0.zip (64-bit only) |
| macOS Binary (x86_64) | alevinQC_1.20.0.tgz |
| macOS Binary (arm64) | alevinQC_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/alevinQC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alevinQC |
| Bioc Package Browser | https://code.bioconductor.org/browse/alevinQC/ |
| Package Short Url | https://bioconductor.org/packages/alevinQC/ |
| Package Downloads Report | Download Stats |