flowGate
Interactive Cytometry Gating in R
Bioconductor version: Release (3.19)
flowGate adds an interactive Shiny app to allow manual GUI-based gating of flow cytometry data in R. Using flowGate, you can draw 1D and 2D span/rectangle gates, quadrant gates, and polygon gates on flow cytometry data by interactively drawing the gates on a plot of your data, rather than by specifying gate coordinates. This package is especially geared toward wet-lab cytometerists looking to take advantage of R for cytometry analysis, without necessarily having a lot of R experience.
Author: Andrew Wight [aut, cre], Harvey Cantor [aut, ldr]
Maintainer: Andrew Wight <andrew.wight10 at gmail.com>
citation("flowGate")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowGate")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowGate")| flowGate | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, FlowCytometry, ImmunoOncology, Preprocessing, Software, WorkflowStep |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | MIT + file LICENSE |
| Depends | flowWorkspace(>= 4.0.6), ggcyto(>= 1.16.0), R (>= 4.2) |
| Imports | shiny (>= 1.5.0), BiocManager (>= 1.30.10), flowCore(>= 2.0.1), dplyr (>= 1.0.0), ggplot2 (>= 3.3.2), rlang (>= 0.4.7), purrr, tibble, methods |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, stringr, tidyverse, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowGate_1.4.0.tar.gz |
| Windows Binary (x86_64) | flowGate_1.4.0.zip (64-bit only) |
| macOS Binary (x86_64) | flowGate_1.4.0.tgz |
| macOS Binary (arm64) | flowGate_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowGate |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowGate |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowGate/ |
| Package Short Url | https://bioconductor.org/packages/flowGate/ |
| Package Downloads Report | Download Stats |