gDRcore
Processing functions and interface to process and analyze drug dose-response data
Bioconductor version: Release (3.19)
This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.
Author: Bartosz Czech [aut] 
, Arkadiusz Gladki [cre, aut] , Marc Hafner [aut] , Pawel Piatkowski [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Marcin Kamianowski [aut], Allison Vuong [aut]
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
citation("gDRcore")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gDRcore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDRcore")| gDRcore | HTML | R Script |
| gDRcore | HTML | R Script |
| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ShinyApps, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2) |
| Imports | BumpyMatrix, BiocParallel, checkmate, futile.logger, gDRutils(>= 1.1.3), MultiAssayExperiment, purrr, stringr, S4Vectors, SummarizedExperiment, data.table |
| System Requirements | |
| URL | https://github.com/gdrplatform/gDRcore https://gdrplatform.github.io/gDRcore/ |
| Bug Reports | https://github.com/gdrplatform/gDRcore/issues |
See More
| Suggests | BiocStyle, gDRstyle(>= 1.1.2), gDRimport(>= 1.1.4), gDRtestData(>= 1.1.6), IRanges, knitr, pkgbuild, qs, testthat, yaml |
| Linking To | |
| Enhances | |
| Depends On Me | gDR |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gDRcore_1.2.0.tar.gz |
| Windows Binary (x86_64) | gDRcore_1.2.0.zip |
| macOS Binary (x86_64) | gDRcore_1.2.0.tgz |
| macOS Binary (arm64) | gDRcore_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gDRcore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gDRcore |
| Bioc Package Browser | https://code.bioconductor.org/browse/gDRcore/ |
| Package Short Url | https://bioconductor.org/packages/gDRcore/ |
| Package Downloads Report | Download Stats |