pvac
PCA-based gene filtering for Affymetrix arrays
Bioconductor version: Release (3.19)
The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).
Author: Jun Lu and Pierre R. Bushel
Maintainer: Jun Lu <jlu276 at gmail.com>, Pierre R. Bushel <bushel at niehs.nih.gov>
Citation (from within R, enter
citation("pvac")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pvac")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pvac")| PCA-based gene filtering for Affymetrix GeneChips | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, QualityControl, Software |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13.5 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 2.8.0) |
| Imports | affy(>= 1.20.0), stats, Biobase |
| System Requirements | |
| URL |
See More
| Suggests | pbapply, affydata, ALLMLL, genefilter |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pvac_1.52.0.tar.gz |
| Windows Binary (x86_64) | pvac_1.52.0.zip |
| macOS Binary (x86_64) | pvac_1.52.0.tgz |
| macOS Binary (arm64) | pvac_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pvac |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pvac |
| Bioc Package Browser | https://code.bioconductor.org/browse/pvac/ |
| Package Short Url | https://bioconductor.org/packages/pvac/ |
| Package Downloads Report | Download Stats |