sangerseqR
Tools for Sanger Sequencing Data in R
Bioconductor version: Release (3.19)
This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.
Author: Jonathon T. Hill, Bradley Demarest
Maintainer: Jonathon Hill <jhill at byu.edu>
Citation (from within R, enter
citation("sangerseqR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sangerseqR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sangerseqR")| Using the sangerseqR package | HTML | R Script |
| Reference Manual |
Details
| biocViews | SNP, Sequencing, Software, Visualization |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.5.0), Biostrings, pwalign, stringr |
| Imports | methods, shiny |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | sangeranalyseR |
| Imports Me | scifer |
| Suggests Me | CrispRVariants |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sangerseqR_1.40.0.tar.gz |
| Windows Binary (x86_64) | sangerseqR_1.40.0.zip |
| macOS Binary (x86_64) | sangerseqR_1.40.0.tgz |
| macOS Binary (arm64) | sangerseqR_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sangerseqR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sangerseqR |
| Bioc Package Browser | https://code.bioconductor.org/browse/sangerseqR/ |
| Package Short Url | https://bioconductor.org/packages/sangerseqR/ |
| Package Downloads Report | Download Stats |