curatedTBData

Curation of existing tuberculosis transcriptomic studies

Bioconductor version: Release (3.19)

The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.

Author: Xutao Wang [aut, cre], W. Evan Johnson [aut], Prasad Patil [aut]

Maintainer: Xutao Wang <xutaow at bu.edu>

Citation (from within R, enter citation("curatedTBData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedTBData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedTBData")

curatedTBData	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, GEO, Homo_sapiens_Data
Version	2.0.0
License	MIT + file LICENSE
Depends	R (>= 4.3.0)
Imports	AnnotationHub, ExperimentHub, MultiAssayExperiment, rlang, stats
System Requirements
URL	https://github.com/compbiomed/curatedTBData
Bug Reports	https://github.com/compbiomed/curatedTBData/issues

Suggests	BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	curatedTBData_2.0.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/curatedTBData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/curatedTBData
Package Short Url	https://bioconductor.org/packages/curatedTBData/
Package Downloads Report	Download Stats