sampleClassifierData

Pre-processed data for use with the sampleClassifier package

Bioconductor version: Release (3.19)

This package contains two microarray and two RNA-seq datasets that have been preprocessed for use with the sampleClassifier package. The RNA-seq data are derived from Fagerberg et al. (2014) and the Illumina Body Map 2.0 data. The microarray data are derived from Roth et al. (2006) and Ge et al. (2005).

Author: Khadija El Amrani

Maintainer: Khadija El Amrani <khadija.el-amrani at charite.de>

Citation (from within R, enter citation("sampleClassifierData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sampleClassifierData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sampleClassifierData")

sampleClassifierData Introduction	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ArrayExpress, ExperimentData, ExpressionData, MicroarrayData, RNASeqData, SequencingData
Version	1.28.0
License	Artistic-2.0
Depends	R (>= 3.5.0), SummarizedExperiment
Imports
System Requirements
URL

Suggests	BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	sampleClassifier
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sampleClassifierData_1.28.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/sampleClassifierData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sampleClassifierData
Package Short Url	https://bioconductor.org/packages/sampleClassifierData/
Package Downloads Report	Download Stats