BubbleTree

DOI: 10.18129/B9.bioc.BubbleTree    

BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

Bioconductor version: Release (3.6)

CNV analysis in groups of tumor samples.

Author: Wei Zhu <zhuw at medimmune.com>, Michael Kuziora <kuzioram at medimmune.com>, Todd Creasy <creasyt at medimmune.com>, Brandon Higgs <higgsb at medimmune.com>

Maintainer: Todd Creasy <creasyt at medimmune.com>, Wei Zhu <weizhu365 at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BubbleTree")

Documentation

HTML	R Script	BubbleTree Tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	CopyNumberVariation, Coverage, Sequencing, Software
Version	2.8.0
In Bioconductor since	BioC 3.1 (R-3.2) (3 years)
License	LGPL (>= 3)
Depends	R (>= 3.3), IRanges, GenomicRanges, plyr, dplyr, magrittr
Imports	BiocGenerics(>= 0.7.5), BiocStyle, Biobase, ggplot2, WriteXLS, gtools, RColorBrewer, limma, grid, gtable, gridExtra, biovizBase, e1071, methods, grDevices, stats, utils
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BubbleTree_2.8.0.tar.gz
Windows Binary	BubbleTree_2.8.0.zip
Mac OS X 10.11 (El Capitan)	BubbleTree_2.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BubbleTree
Package Short Url	http://bioconductor.org/packages/BubbleTree/
Package Downloads Report	Download Stats