DAPAR

DOI: 10.18129/B9.bioc.DAPAR    

Tools for the Differential Analysis of Proteins Abundance with R

Bioconductor version: Release (3.6)

This package contains a collection of functions for the visualisation and the statistical analysis of proteomic data.

Author: Samuel Wieczorek [cre,aut], Florence Combes [aut], Thomas Burger [aut], Cosmin Lazar [ctb], Alexia Dorffer [ctb]

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DAPAR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DAPAR")

 

PDF		DAPAR One Page Introduction
PDF	R Script	Prostar user manual
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, GO, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version	1.10.4
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.4.2)
Imports	MSnbase, RColorBrewer, stats, preprocessCore, Cairo, png, lattice, reshape2, gplots, pcaMethods, ggplot2, limma, knitr, tmvtnorm, norm, impute, imputeLCMD, doParallel, parallel, foreach, grDevices, graphics, openxlsx, utils, cp4p (>= 0.3.5), scales, Matrix, vioplot, imp4p (>= 0.5), highcharter, DAPARdata(>= 1.7.1), siggenes, graph, lme4, readxl, clusterProfiler, dplyr, tidyr, AnnotationDbi
LinkingTo
Suggests	BiocGenerics, Biobase, testthat, BiocStyle, Prostar
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	Prostar
Suggests Me	DAPARdata
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DAPAR_1.10.4.tar.gz
Windows Binary	DAPAR_1.10.4.zip
Mac OS X 10.11 (El Capitan)	DAPAR_1.10.4.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DAPAR
Package Short Url	http://bioconductor.org/packages/DAPAR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive