GENIE3

DOI: 10.18129/B9.bioc.GENIE3    

GEne Network Inference with Ensemble of trees

Bioconductor version: Release (3.6)

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts

Maintainer: Van Anh Huynh-Thu <vahuynh at ulg.ac.be>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GENIE3")

Documentation

HTML	R Script	GENIE3
PDF		Reference Manual
Text		NEWS

Details

biocViews	DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology
Version	1.0.0
License	GPL (>= 2)
Depends
Imports	stats, reshape2
LinkingTo
Suggests	knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GENIE3_1.0.0.tar.gz
Windows Binary	GENIE3_1.0.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	GENIE3_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GENIE3
Package Short Url	http://bioconductor.org/packages/GENIE3/
Package Downloads Report	Download Stats