Logolas

DOI: 10.18129/B9.bioc.Logolas    

Flexible and Customized Logo Plots using symbols, alphabets, numbers and alphanumeric strings

Bioconductor version: Release (3.6)

Produces logo plots of a variety of symbols and names comprising English alphabets, numerics and punctuations. Can be used for sequence motif generation, mutation pattern generation, protein amino acid geenration and symbol strength representation in any generic context.

Author: Kushal Dey [aut, cre]

Maintainer: Kushal Dey <kkdey at uchicago.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Logolas")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Logolas")

 

PDF	R Script	Flexible Logo plots of symbols and alphanumeric strings using Logolas
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, SequenceMatching, Software, Visualization
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	GPL (>= 2)
Depends	R (>= 3.4)
Imports	grid, graphics
LinkingTo
Suggests	knitr, BiocStyle, Biobase, roxygen2, devtools, xtable, gridExtra, RColorBrewer, seqLogo, aRxiv
SystemRequirements
Enhances
URL	https://github.com/kkdey/Logolas
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Logolas_1.2.0.tar.gz
Windows Binary	Logolas_1.2.0.zip
Mac OS X 10.11 (El Capitan)	Logolas_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Logolas
Package Short Url	http://bioconductor.org/packages/Logolas/
Package Downloads Report	Download Stats