MLSeq

DOI: 10.18129/B9.bioc.MLSeq    

Machine learning interface for RNA-Seq data

Bioconductor version: Release (3.6)

This package applies several machine learning methods, including SVM, bagSVM, Random Forest and CART, to RNA-Seq data.

Author: Gokmen Zararsiz, Dincer Goksuluk, Selcuk Korkmaz, Vahap Eldem, Izzet Parug Duru, Turgay Unver, Ahmet Ozturk

Maintainer: Gokmen Zararsiz <gokmenzararsiz at hotmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MLSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MLSeq")

 

PDF	R Script	MLSeq
PDF		Reference Manual
Text		README

Details

biocViews	Classification, Clustering, RNASeq, Sequencing, Software
Version	1.18.0
In Bioconductor since	BioC 2.14 (R-3.1) (4 years)
License	GPL(>=2)
Depends	R (>= 3.0.0), caret, DESeq2, Biobase, limma, randomForest, edgeR
Imports	methods
LinkingTo
Suggests	knitr, e1071, kernlab, earth, ellipse, fastICA, gam, ipred, klaR, MASS, mda, mgcv, mlbench, nnet, party, pls, pROC, proxy, RANN, spls, affy
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MLSeq_1.18.0.tar.gz
Windows Binary	MLSeq_1.18.0.zip
Mac OS X 10.11 (El Capitan)	MLSeq_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MLSeq
Package Short Url	http://bioconductor.org/packages/MLSeq/
Package Downloads Report	Download Stats