Rhtslib

DOI: 10.18129/B9.bioc.Rhtslib    

HTSlib high-throughput sequencing library as an R package

Bioconductor version: Release (3.6)

This package provides version 1.1 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").

Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rhtslib")

Documentation

HTML	R Script	Motivation and use of Rhtslib
PDF		Reference Manual

Details

biocViews	DataImport, Sequencing, Software
Version	1.10.0
In Bioconductor since	BioC 3.1 (R-3.2) (3 years)
License	LGPL (>= 2)
Depends
Imports	zlibbioc
LinkingTo	zlibbioc
Suggests	BiocStyle, knitr
SystemRequirements
Enhances
URL	https://github.com/nhayden/Rhtslib http://www.htslib.org/
BugReports	https://github.com/nhayden/Rhtslib
Depends On Me	deepSNV
Imports Me	csaw, deepSNV, diffHic, scPipe
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rhtslib_1.10.0.tar.gz
Windows Binary	Rhtslib_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	Rhtslib_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rhtslib
Package Short Url	http://bioconductor.org/packages/Rhtslib/
Package Downloads Report	Download Stats