TDARACNE

DOI: 10.18129/B9.bioc.TDARACNE    

Network reverse engineering from time course data.

Bioconductor version: Release (3.6)

To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.

Author: Zoppoli P.,Morganella S., Ceccarelli M.

Maintainer: Zoppoli Pietro <zoppoli.pietro at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TDARACNE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TDARACNE")

 

PDF	R Script	TDARACNE
PDF		Reference Manual

Details

biocViews	Microarray, Software, TimeCourse
Version	1.28.0
In Bioconductor since	BioC 2.8 (R-2.13) (7 years)
License	GPL-2
Depends	GenKern, Rgraphviz, Biobase
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TDARACNE_1.28.0.tar.gz
Windows Binary	TDARACNE_1.28.0.zip
Mac OS X 10.11 (El Capitan)	TDARACNE_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TDARACNE
Package Short Url	http://bioconductor.org/packages/TDARACNE/
Package Downloads Report	Download Stats