TransView

DOI: 10.18129/B9.bioc.TransView    

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Bioconductor version: Release (3.6)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TransView")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransView")

 

PDF	R Script	An introduction to TransView
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version	1.22.0
In Bioconductor since	BioC 2.11 (R-2.15) (5.5 years)
License	GPL-3
Depends	methods, GenomicRanges
Imports	BiocGenerics, S4Vectors(>= 0.9.25), IRanges, Rsamtools(>= 1.19.38), zlibbioc, gplots
LinkingTo	Rsamtools
Suggests	RUnit, pasillaBamSubset
SystemRequirements
Enhances
URL	http://bioconductor.org/packages/release/bioc/html/TransView.html
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TransView_1.22.0.tar.gz
Windows Binary	TransView_1.22.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	TransView_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TransView
Package Short Url	http://bioconductor.org/packages/TransView/
Package Downloads Report	Download Stats