bnbc

DOI: 10.18129/B9.bioc.bnbc    

Bandwise normalization and batch correction of Hi-C data

Bioconductor version: Release (3.6)

Tools to normalize (several) Hi-C data from replicates.

Author: Kipper Fletez-Brant [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Kipper Fletez-Brant <cafletezbrant at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bnbc")

Documentation

HTML	R Script	bnbc User's Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	HiC, Normalization, Preprocessing, Software
Version	1.0.0
License	Artistic-2.0
Depends	R (>= 3.4.0), methods, BiocGenerics, SummarizedExperiment, GenomicRanges
Imports	Rcpp (>= 0.12.12), IRanges, GenomeInfoDb, S4Vectors, matrixStats, preprocessCore, sva, parallel, EBImage, utils
LinkingTo	Rcpp
Suggests	BiocStyle, knitr, rmarkdown, RUnit
SystemRequirements
Enhances
URL	https://github.com/hansenlab/bnbc
BugReports	https://github.com/hansenlab/bnbc/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bnbc_1.0.0.tar.gz
Windows Binary	bnbc_1.0.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	bnbc_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bnbc
Package Short Url	http://bioconductor.org/packages/bnbc/
Package Downloads Report	Download Stats