chroGPS

DOI: 10.18129/B9.bioc.chroGPS    

Visualizing the epigenome

Bioconductor version: Release (3.6)

We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.

Author: Oscar Reina, David Rossell

Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chroGPS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chroGPS")

 

PDF	R Script	Manual for the chroGPS library
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, Software, Visualization
Version	1.27.3
In Bioconductor since	BioC 2.11 (R-2.15) (5.5 years)
License	GPL (>=2.14)
Depends	R (>= 3.1.0), GenomicRanges, methods, Biobase, MASS, graphics, stats, changepoint
Imports	cluster, DPpackage, ICSNP
LinkingTo
Suggests
SystemRequirements
Enhances	parallel, XML, rgl
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chroGPS_1.27.3.tar.gz
Windows Binary	chroGPS_1.27.3.zip
Mac OS X 10.11 (El Capitan)	chroGPS_1.27.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chroGPS
Package Short Url	http://bioconductor.org/packages/chroGPS/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive