gaucho

DOI: 10.18129/B9.bioc.gaucho    

Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering

Bioconductor version: Release (3.6)

Use genetic algorithms to determine the relationship between clones in heterogenous populations such as cancer sequencing samples

Author: Alex Murison [aut, cre], Christopher Wardell [aut, cre]

Maintainer: Alex Murison <Alexander.Murison at icr.ac.uk>, Christopher Wardell <Christopher.Wardell at icr.ac.uk>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaucho")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaucho")

 

PDF	R Script	An introduction to gaucho
PDF		Reference Manual
Text		NEWS

Details

biocViews	Genetics, SNP, Sequencing, Software, SomaticMutation
Version	1.14.0
In Bioconductor since	BioC 2.14 (R-3.1) (4 years)
License	GPL-3
Depends	R (>= 3.0.0), compiler, GA, graph, heatmap.plus, png, Rgraphviz
Imports
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gaucho_1.14.0.tar.gz
Windows Binary	gaucho_1.14.0.zip
Mac OS X 10.11 (El Capitan)	gaucho_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gaucho
Package Short Url	http://bioconductor.org/packages/gaucho/
Package Downloads Report	Download Stats