iCheck

DOI: 10.18129/B9.bioc.iCheck    

QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

Bioconductor version: Release (3.6)

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

Author: Weiliang Qiu [aut, cre], Brandon Guo [aut, ctb], Christopher Anderson [aut, ctb], Barbara Klanderman [aut, ctb], Vincent Carey [aut, ctb], Benjamin Raby [aut, ctb]

Maintainer: Weiliang Qiu <stwxq at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iCheck")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCheck")

 

PDF	R Script	iCheck
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, DifferentialExpression, GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software, TwoChannel
Version	1.8.0
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	GPL (>= 2)
Depends	R (>= 3.2.0), Biobase, lumi, gplots
Imports	stats, graphics, preprocessCore, grDevices, randomForest, affy, limma, parallel, GeneSelectMMD, rgl, MASS, lmtest, scatterplot3d, utils
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iCheck_1.8.0.tar.gz
Windows Binary	iCheck_1.8.0.zip
Mac OS X 10.11 (El Capitan)	iCheck_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iCheck
Package Short Url	http://bioconductor.org/packages/iCheck/
Package Downloads Report	Download Stats