qcmetrics

DOI: 10.18129/B9.bioc.qcmetrics    

A Framework for Quality Control

Bioconductor version: Release (3.6)

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qcmetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")

 

PDF	R Script	The 'qcmetrics' infrastructure for quality control and reporting
HTML	R Script	Index file for the qcmetrics package vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version	1.16.0
In Bioconductor since	BioC 2.13 (R-3.0) (4.5 years)
License	GPL-2
Depends	R (>= 3.3)
Imports	Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander, S4Vectors
LinkingTo
Suggests	affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/lgatto/qcmetrics
BugReports	https://github.com/lgatto/qcmetrics/issues
Depends On Me
Imports Me	MSstatsQC
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qcmetrics_1.16.0.tar.gz
Windows Binary	qcmetrics_1.16.0.zip
Mac OS X 10.11 (El Capitan)	qcmetrics_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qcmetrics
Package Short Url	http://bioconductor.org/packages/qcmetrics/
Package Downloads Report	Download Stats