splatter

DOI: 10.18129/B9.bioc.splatter    

Simple Simulation of Single-cell RNA Sequencing Data

Bioconductor version: Release (3.6)

Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.

Author: Luke Zappia

Maintainer: Luke Zappia <luke.zappia at mcri.edu.au>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splatter")

Documentation

HTML	R Script	An introduction to the Splatter package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcriptomics
Version	1.2.2
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	GPL-3 + file LICENSE
Depends	R (>= 3.4), scater, SingleCellExperiment
Imports	akima, BiocGenerics, BiocParallel, checkmate, edgeR, fitdistrplus, ggplot2, locfit, matrixStats, methods, scales, stats, SummarizedExperiment, utils
LinkingTo
Suggests	BiocStyle, covr, cowplot, knitr, limSolve, lme4, progress, pscl, testthat, rmarkdown, S4Vectors, scDD, scran, mfa, phenopath, zinbwave, BASiCS
SystemRequirements
Enhances
URL	https://github.com/Oshlack/splatter
BugReports	https://github.com/Oshlack/splatter/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	splatter_1.2.2.tar.gz
Windows Binary	splatter_1.2.2.zip
Mac OS X 10.11 (El Capitan)	splatter_1.2.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/splatter
Package Short Url	http://bioconductor.org/packages/splatter/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive