methyvimData

DOI: 10.18129/B9.bioc.methyvimData    

Example experimental data for use with the methyvim package

Bioconductor version: Release (3.6)

Contains a reduced set of simulated data inspired by data produced by the Infinium EPIC BeadChip assays by Illumina. The example data set is made available to highlight many of the key procedures that are available within the core functions of the methyvim package.

Author: Nima Hejazi [aut, cre]

Maintainer: Nima Hejazi <nhejazi at berkeley.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methyvimData")

Documentation

HTML	R Script	Anatomy of the `methyvimData` package
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Clustering, DNAMethylation, DifferentialMethylation, ExperimentData, MethylSeq, MethylationArray
Version	1.0.0
License	file LICENSE
Depends	R (>= 3.4.0), minfi
Imports
LinkingTo
Suggests	Biobase, BiocStyle, SummarizedExperiment, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	methyvim
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methyvimData_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/methyvimData
Package Short Url	http://bioconductor.org/packages/methyvimData/
Package Downloads Report	Download Stats