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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")
In most cases, you don't need to download the package archive at all.
ChIPseqR
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ChIPseqR.
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Bioconductor version: 3.1
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
Author: Peter Humburg
Maintainer: Peter Humburg <peter.humburg at well.ox.ac.uk>
Citation (from within R,
enter citation("ChIPseqR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPseqR")
| R Script | Introduction to ChIPseqR | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Infrastructure, Software |
| Version | 1.22.1 |
| In Bioconductor since | BioC 2.5 (R-2.10) (6.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0), methods, BiocGenerics, S4Vectors |
| Imports | Biostrings, fBasics, GenomicRanges, IRanges, graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/humburg/ChIPseqR |
| BugReports | https://github.com/humburg/ChIPseqR/issue |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ChIPseqR_1.22.1.tar.gz |
| Windows Binary | ChIPseqR_1.22.1.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | ChIPseqR_1.22.1.tgz |
| Mac OS X 10.9 (Mavericks) | ChIPseqR_1.22.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ChIPseqR/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/ChIPseqR/ |
| Package Downloads Report | Download Stats |
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