To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReQON")

In most cases, you don't need to download the package archive at all.

ReQON

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ReQON.

Recalibrating Quality Of Nucleotides

Bioconductor version: 3.1

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <ccabansk at genome.wustl.edu>

Citation (from within R, enter citation("ReQON")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReQON")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")

biocViews	Preprocessing, QualityControl, Sequencing, Software
Version	1.14.0
In Bioconductor since	BioC 2.9 (R-2.14) (4.5 years)
License	GPL-2
Depends	R (>= 3.0.2), Rsamtools, seqbias
Imports	rJava, graphics, stats, utils, grDevices
LinkingTo
Suggests	BiocStyle
SystemRequirements	Java version >= 1.6
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	ReQON_1.14.0.tar.gz
Windows Binary	ReQON_1.14.0.zip
Mac OS X 10.6 (Snow Leopard)	ReQON_1.14.0.tgz
Mac OS X 10.9 (Mavericks)	ReQON_1.14.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/ReQON/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/ReQON/
Package Downloads Report	Download Stats

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