To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SELEX")

In most cases, you don't need to download the package archive at all.

SELEX

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see SELEX.

Functions for analyzing SELEX-seq data

Bioconductor version: 3.1

Tools for quantifying DNA binding specificities based on SELEX-seq data

Author: Chaitanya Rastogi, Dahong Liu, and Harmen Bussemaker

Maintainer: Harmen Bussemaker <hjb2004 at columbia.edu>

Citation (from within R, enter citation("SELEX")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SELEX")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SELEX")

PDF	R Script	Motif Discovery with SELEX-seq
PDF		Reference Manual

biocViews	GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version	1.0.0
In Bioconductor since	BioC 3.1 (R-3.2) (1 year)
License	GPL (>=2)
Depends	R (>= 2.7.0), rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports
LinkingTo
Suggests
SystemRequirements	Java (>= 1.5)
Enhances
URL	http://bussemakerlab.org/software/SELEX/
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	SELEX_1.0.0.tar.gz
Windows Binary	SELEX_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)	SELEX_1.0.0.tgz
Mac OS X 10.9 (Mavericks)	SELEX_1.0.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/SELEX/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/SELEX/
Package Downloads Report	Download Stats

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