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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chimera")
In most cases, you don't need to download the package archive at all.
chimera
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see chimera.
A package for secondary analysis of fusion products
Bioconductor version: 3.1
This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.
Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero
Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>
Citation (from within R,
enter citation("chimera")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chimera")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chimera")
| R Script | chimera | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Infrastructure, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | Artistic-2.0 |
| Depends | Biobase, GenomicRanges(>= 1.13.3), Rsamtools(>= 1.13.1), GenomicAlignments, methods, AnnotationDbi, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, Homo.sapiens |
| Imports | |
| LinkingTo | |
| Suggests | BiocParallel, geneplotter |
| SystemRequirements | STAR, TopHat, bowtie and samtools are required for some functionalities |
| Enhances | Rsubread, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, BSgenome.Mmusculus.UCSC.mm10, TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene |
| URL | |
| Depends On Me | oneChannelGUI |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | chimera_1.10.0.tar.gz |
| Windows Binary | chimera_1.10.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | chimera_1.10.0.tgz |
| Mac OS X 10.9 (Mavericks) | chimera_1.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/chimera/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/chimera/ |
| Package Downloads Report | Download Stats |
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