To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cytofkit")

In most cases, you don't need to download the package archive at all.

cytofkit

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see cytofkit.

cytofkit: an integrated analysis pipeline for mass cytometry data

Bioconductor version: 3.1

An integrated mass cytometry data analysis pipeline that enables simultaneous illustration of cellular diversity and progression.

Author: Jinmiao Chen, Hao Chen

Maintainer: Jinmiao Chen <Chen_Jinmiao at immunol.a-star.edu.sg>

Citation (from within R, enter citation("cytofkit")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cytofkit")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cytofkit")

HTML	R Script	cytofkit: run with an example
HTML	R Script	cytofkit: workflow of mass cytometry data analysis
PDF		Reference Manual
Text		NEWS

biocViews	BiomedicalInformatics, CellBiology, Clustering, DimensionReduction, GUI, MassSpectrometry, Software
Version	1.1.0
In Bioconductor since	BioC 3.1 (R-3.2) (1 year)
License	GPL-3
Depends	R (>= 2.10.0)
Imports	tcltk, stats, Rtsne, e1071, flowCore, ggplot2, gplots, vegan, reshape, Biobase
LinkingTo
Suggests	knitr, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	cytofkit_1.1.0.tar.gz
Windows Binary	cytofkit_1.1.0.zip
Mac OS X 10.6 (Snow Leopard)	cytofkit_1.1.0.tgz
Mac OS X 10.9 (Mavericks)	cytofkit_1.1.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/cytofkit/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/cytofkit/
Package Downloads Report	Download Stats

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