To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

In most cases, you don't need to download the package archive at all.

ensemblVEP

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ensemblVEP.

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: 3.1

Query the Ensembl Variant Effect Predictor via the perl API

Author: Valerie Obenchain <vobencha at fhcrc.org>,

Maintainer: Valerie Obenchain <vobencha at fhcrc.org>

Citation (from within R, enter citation("ensemblVEP")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ensemblVEP")

biocViews	Annotation, SNP, Software, VariantAnnotation
Version	1.8.1
In Bioconductor since	BioC 2.12 (R-3.0) (3 years)
License	Artistic-2.0
Depends	methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports	Biostrings
LinkingTo
Suggests	RUnit
SystemRequirements	Ensembl VEP (API version 80) and the Perl package DBD::mysql must be installed. See the package README and Ensembl web site, http://www.ensembl.org/info/docs/tools/vep/index.html for installation instructions.
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	ensemblVEP_1.8.1.tar.gz
Windows Binary	ensemblVEP_1.8.1.zip
Mac OS X 10.6 (Snow Leopard)	ensemblVEP_1.8.1.tgz
Mac OS X 10.9 (Mavericks)	ensemblVEP_1.8.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/ensemblVEP/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/ensemblVEP/
Package Downloads Report	Download Stats

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