To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graphite")

In most cases, you don't need to download the package archive at all.

graphite

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see graphite.

GRAPH Interaction from pathway Topological Environment

Bioconductor version: 3.1

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, Reactome and SPIKE databases.

Author: Gabriele Sales <gabriele.sales at unipd.it>, Enrica Calura <enrica.calura at gmail.com>, Chiara Romualdi <chiara.romualdi at unipd.it>

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

Citation (from within R, enter citation("graphite")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graphite")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graphite")

PDF	R Script	GRAPH Interaction from pathway Topological Environment
PDF		Reference Manual
Text		NEWS
Text		LICENSE

biocViews	BioCarta, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software, ThirdPartyClient
Version	1.14.1
In Bioconductor since	BioC 2.9 (R-2.14) (4.5 years)
License	AGPL-3
Depends	R (>= 2.10), BiocGenerics, methods
Imports	AnnotationDbi, graph, stats, utils
LinkingTo
Suggests	BiocStyle, DEGraph(>= 1.4), hgu133plus2.db, RCytoscape(>= 1.6), SPIA(>= 2.2), topologyGSA (>= 1.4.0), clipper, ALL
SystemRequirements
Enhances
URL
Depends On Me	ToPASeq
Imports Me	facopy, mogsa, ReactomePA
Suggests Me	clipper
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	graphite_1.14.1.tar.gz
Windows Binary	graphite_1.14.1.zip
Mac OS X 10.6 (Snow Leopard)	graphite_1.14.1.tgz
Mac OS X 10.9 (Mavericks)	graphite_1.14.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/graphite/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/graphite/
Package Downloads Report	Download Stats

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