To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

In most cases, you don't need to download the package archive at all.

rBiopaxParser

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see rBiopaxParser.

Parses BioPax files and represents them in R

Bioconductor version: 3.1

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <dev at frankkramer.de>

Citation (from within R, enter citation("rBiopaxParser")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")

biocViews	DataRepresentation, Software
Version	2.6.0
In Bioconductor since	BioC 2.12 (R-3.0) (3 years)
License	GPL (>= 2)
Depends	R (>= 3.0.0), data.table
Imports	XML
LinkingTo
Suggests	Rgraphviz, RCurl, graph, RUnit, BiocGenerics, nem, RBGL
SystemRequirements
Enhances
URL	https://github.com/frankkramer/rBiopaxParser
Depends On Me
Imports Me	pwOmics
Suggests Me	AnnotationHub, NetPathMiner
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	rBiopaxParser_2.6.0.tar.gz
Windows Binary	rBiopaxParser_2.6.0.zip
Mac OS X 10.6 (Snow Leopard)	rBiopaxParser_2.6.0.tgz
Mac OS X 10.9 (Mavericks)	rBiopaxParser_2.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/rBiopaxParser/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/rBiopaxParser/
Package Downloads Report	Download Stats

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