SNPlocs.Hsapiens.dbSNP144.GRCh37

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP144.GRCh37.

SNP locations for Homo sapiens (dbSNP Build 144)

Bioconductor version: 3.1

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh37.p13. WARNING: Note that the GRCh37.p13 genome is a patched version of GRCh37 however the patch doesn't alter chromosomes 1-22, X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 and they will land at the correct location but this injection will exclude chrM (i.e. nothing will be injected in that sequence).

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP144.GRCh37")

Documentation

Details

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Follow Installation instructions to use this package in your R session.