LinkHD

DOI: 10.18129/B9.bioc.LinkHD    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see LinkHD.

LinkHD: a versatile framework to explore and integrate heterogeneous data

Bioconductor version: 3.10

Here we present Link-HD, an approach to integrate heterogeneous datasets, as a generalization of STATIS-ACT (“Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux”), a family of methods to join and compare information from multiple subspaces. However, STATIS-ACT has some drawbacks since it only allows continuous data and it is unable to establish relationships between samples and features. In order to tackle these constraints, we incorporate multiple distance options and a linear regression based Biplot model in order to stablish relationships between observations and variable and perform variable selection.

Author: Laura M. Zingaretti [aut, cre]

Maintainer: "Laura M Zingaretti" <m.lau.zingaretti at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LinkHD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LinkHD")

 

HTML	R Script	Annotating Genomic Variants
PDF		Reference Manual

Details

biocViews	Classification, MultipleComparison, Regression, Software
Version	1.0.0
In Bioconductor since	BioC 3.10 (R-3.6) (< 6 months)
License	GPL-3
Depends	R (>= 3.6.0), methods, ggplot2, stats
Imports	scales, cluster, graphics, ggpubr, gridExtra, vegan, rio, MultiAssayExperiment, emmeans, reshape2, data.table
LinkingTo
Suggests	MASS (>= 7.3.0), knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LinkHD_1.0.0.tar.gz
Windows Binary	LinkHD_1.0.0.zip
Mac OS X 10.11 (El Capitan)	LinkHD_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/LinkHD
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LinkHD
Package Short Url	https://bioconductor.org/packages/LinkHD/
Package Downloads Report	Download Stats