MethylSeekR

DOI: 10.18129/B9.bioc.MethylSeekR    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see MethylSeekR.

Segmentation of Bis-seq data

Bioconductor version: 3.12

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MethylSeekR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeekR")

 

PDF	R Script	MethylSeekR
PDF		Reference Manual

Details

biocViews	DNAMethylation, MethylSeq, Sequencing, Software
Version	1.30.0
In Bioconductor since	BioC 2.12 (R-3.0) (8 years)
License	GPL (>=2)
Depends	rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports	IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
LinkingTo
Suggests	BSgenome.Hsapiens.UCSC.hg18
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	methylPipe, RnBeads
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MethylSeekR_1.30.0.tar.gz
Windows Binary	MethylSeekR_1.30.0.zip
macOS 10.13 (High Sierra)	MethylSeekR_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MethylSeekR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MethylSeekR
Package Short Url	https://bioconductor.org/packages/MethylSeekR/
Package Downloads Report	Download Stats