OGSA

DOI: 10.18129/B9.bioc.OGSA    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see OGSA.

Outlier Gene Set Analysis

Bioconductor version: 3.12

OGSA provides a global estimate of pathway deregulation in cancer subtypes by integrating the estimates of significance for individual pathway members that have been identified by outlier analysis.

Author: Michael F. Ochs <ochsm at tcnj.edu>

Maintainer: Michael F. Ochs <ochsm at tcnj.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OGSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CopyNumberVariation, GeneExpression, Microarray, Software
Version	1.20.0
In Bioconductor since	BioC 3.2 (R-3.2) (5.5 years)
License	GPL (== 2)
Depends	R (>= 3.2.0)
Imports	gplots (>= 2.8.0), limma(>= 3.18.13), Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/OGSA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OGSA
Package Short Url	https://bioconductor.org/packages/OGSA/
Package Downloads Report	Download Stats