STRINGdb

DOI: 10.18129/B9.bioc.STRINGdb    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see STRINGdb.

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Bioconductor version: 3.12

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (https://www.string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STRINGdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

 

PDF	R Script	STRINGdb Vignette
PDF		Reference Manual

Details

biocViews	Network, Software
Version	2.2.2
In Bioconductor since	BioC 2.13 (R-3.0) (7.5 years)
License	GPL-2
Depends	R (>= 2.14.0)
Imports	png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer, gplots, hash, plotrix
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me	PPInfer, scsR
Imports Me	coexnet, glmSparseNet, IMMAN, pwOmics, RITAN, XINA
Suggests Me	epiNEM, GeneNetworkBuilder, netSmooth, PCAN
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	STRINGdb_2.2.2.tar.gz
Windows Binary	STRINGdb_2.2.2.zip
macOS 10.13 (High Sierra)	STRINGdb_2.2.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/STRINGdb
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/STRINGdb
Package Short Url	https://bioconductor.org/packages/STRINGdb/
Package Downloads Report	Download Stats