TPP2D

DOI: 10.18129/B9.bioc.TPP2D    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see TPP2D.

Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)

Bioconductor version: 3.12

Detection of ligand-protein interactions from 2D thermal profiles (DLPTP), Performs an FDR-controlled analysis of 2D-TPP experiments by functional analysis of dose-response curves across temperatures.

Author: Nils Kurzawa [aut, cre], Holger Franken [aut], Simon Anders [aut], Wolfgang Huber [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nils.kurzawa at embl.de>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TPP2D")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP2D")

 

HTML	R Script	Introduction to TPP2D for 2D-TPP analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Proteomics, Software
Version	1.6.0
In Bioconductor since	BioC 3.9 (R-3.6) (2 years)
License	GPL-3
Depends	R (>= 3.6.0), stats, utils, dplyr, methods
Imports	ggplot2, tidyr, foreach, doParallel, openxlsx, stringr, RCurl, parallel, MASS, BiocParallel, limma
LinkingTo
Suggests	knitr, testthat
SystemRequirements
Enhances
URL	http://bioconductor.org/packages/TPP2D
BugReports	https://support.bioconductor.org/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TPP2D_1.6.0.tar.gz
Windows Binary	TPP2D_1.6.0.zip
macOS 10.13 (High Sierra)	TPP2D_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TPP2D
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TPP2D
Package Short Url	https://bioconductor.org/packages/TPP2D/
Package Downloads Report	Download Stats