epivizrChart

DOI: 10.18129/B9.bioc.epivizrChart    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see epivizrChart.

R interface to epiviz web components

Bioconductor version: 3.12

This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.

Author: Brian Gottfried [aut], Jayaram Kancherla [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epivizrChart")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrChart")

 

HTML	R Script	Introduction to epivizrChart
HTML	R Script	Visualizing `RangeSummarizedExperiment` objects Shiny Apps using epivizrChart
HTML	R Script	Visualizing Files with epivizrChart
HTML	R Script	Visualizing genomic data in Shiny Apps using epivizrChart
PDF		Reference Manual
Text		NEWS

Details

biocViews	GUI, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 3.6 (R-3.4) (3.5 years)
License	Artistic-2.0
Depends	R (>= 3.4.0)
Imports	epivizrData(>= 1.5.1), epivizrServer, htmltools, rjson, methods, BiocGenerics
LinkingTo
Suggests	testthat, roxygen2, knitr, Biobase, GenomicRanges, S4Vectors, IRanges, SummarizedExperiment, antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle, Homo.sapiens, shiny, minfi, Rsamtools, rtracklayer, RColorBrewer, magrittr, AnnotationHub
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	epivizrChart_1.12.0.tar.gz
Windows Binary	epivizrChart_1.12.0.zip
macOS 10.13 (High Sierra)	epivizrChart_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/epivizrChart
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epivizrChart
Package Short Url	https://bioconductor.org/packages/epivizrChart/
Package Downloads Report	Download Stats