isomiRs

DOI: 10.18129/B9.bioc.isomiRs    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see isomiRs.

Analyze isomiRs and miRNAs from small RNA-seq

Bioconductor version: 3.12

Characterization of miRNAs and isomiRs, clustering and differential expression.

Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut]

Maintainer: Lorena Pantano <lorena.pantano at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("isomiRs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("isomiRs")

 

HTML	R Script	miRNA and isomiR analysis
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Clustering, DifferentialExpression, ImmunoOncology, RNASeq, Software, miRNA
Version	1.18.1
In Bioconductor since	BioC 3.3 (R-3.3) (5 years)
License	MIT + file LICENSE
Depends	R (>= 3.5), DiscriMiner, SummarizedExperiment
Imports	AnnotationDbi, assertive.sets, BiocGenerics, Biobase, broom, cluster, cowplot, DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, stringr, S4Vectors, tidyr, tibble
LinkingTo
Suggests	knitr, org.Mm.eg.db, targetscan.Hs.eg.db, pheatmap, BiocStyle, testthat
SystemRequirements
Enhances
URL
BugReports	https://github.com/lpantano/isomiRs/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	isomiRs_1.18.1.tar.gz
Windows Binary	isomiRs_1.18.1.zip
macOS 10.13 (High Sierra)	isomiRs_1.18.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/isomiRs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/isomiRs
Package Short Url	https://bioconductor.org/packages/isomiRs/
Package Downloads Report	Download Stats