ldblock

DOI: 10.18129/B9.bioc.ldblock    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see ldblock.

data structures for linkage disequilibrium measures in populations

Bioconductor version: 3.12

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ldblock")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")

 

HTML	R Script	ldblock package: linkage disequilibrium data structures
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.20.0
In Bioconductor since	BioC 3.2 (R-3.2) (5.5 years)
License	Artistic-2.0
Depends	R (>= 3.5), methods
Imports	Matrix, snpStats, VariantAnnotation, GenomeInfoDb, httr, ensembldb, EnsDb.Hsapiens.v75, Rsamtools, GenomicFiles(>= 1.13.6), BiocGenerics(>= 0.25.1)
LinkingTo
Suggests	RUnit, knitr, BiocStyle, gwascat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	gQTLstats
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ldblock_1.20.0.tar.gz
Windows Binary	ldblock_1.20.0.zip
macOS 10.13 (High Sierra)	ldblock_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ldblock
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ldblock
Package Short Url	https://bioconductor.org/packages/ldblock/
Package Downloads Report	Download Stats