tRNAdbImport

DOI: 10.18129/B9.bioc.tRNAdbImport    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see tRNAdbImport.

Importing from tRNAdb and mitotRNAdb as GRanges objects

Bioconductor version: 3.12

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNAdbImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAdbImport")

 

HTML	R Script	tRNAdbImport
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Software, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.8 (R-3.5) (2.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.5), GenomicRanges, Modstrings, Structstrings, tRNA
Imports	Biostrings, BiocGenerics, stringr, xml2, S4Vectors, methods, httr, IRanges, utils
LinkingTo
Suggests	knitr, rmarkdown, testthat, httptest, BiocStyle, rtracklayer
SystemRequirements
Enhances
URL
BugReports	https://github.com/FelixErnst/tRNAdbImport/issues
Depends On Me
Imports Me	EpiTxDb
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tRNAdbImport_1.8.0.tar.gz
Windows Binary	tRNAdbImport_1.8.0.zip
macOS 10.13 (High Sierra)	tRNAdbImport_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tRNAdbImport
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tRNAdbImport
Package Short Url	https://bioconductor.org/packages/tRNAdbImport/
Package Downloads Report	Download Stats