MMAPPR2data

DOI: 10.18129/B9.bioc.MMAPPR2data    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see MMAPPR2data.

Sample Data for MMAPPR2

Bioconductor version: 3.12

Contains data for illustration purposes in the MMAPPR2 package, namely simulated BAM files containing RNA-Seq data for a mutation in the slc24a5 gene, taken from the GRCz11 genome. Also contains reference sequence and annotation files for the region.

Author: Kyle Johnsen [aut], Jonathon Hill [cre]

Maintainer: Jonathon Hill <jhill at byu.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MMAPPR2data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MMAPPR2data")

 

HTML	R Script	Using MMAPPR2data Resources
PDF		Reference Manual
Text		NEWS

Details

biocViews	Danio_rerio_Data, ExperimentData, Genome, RNASeqData, SequencingData
Version	1.4.0
License	GPL-3
Depends	R (>= 3.6.0)
Imports	Rsamtools
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, roxygen2, seqinr, readr
SystemRequirements
Enhances	MMAPPR2
URL	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613585/ https://github.com/kjohnsen/MMAPPR2
Depends On Me
Imports Me
Suggests Me	MMAPPR2
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MMAPPR2data_1.4.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MMAPPR2data
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MMAPPR2data
Package Short Url	https://bioconductor.org/packages/MMAPPR2data/
Package Downloads Report	Download Stats