leeBamViews

DOI: 10.18129/B9.bioc.leeBamViews    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see leeBamViews.

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Bioconductor version: 3.12

data from PMID 19096707; prototype for managing multiple NGS samples

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("leeBamViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("leeBamViews")

 

PDF	R Script	managing multiple NGS samples with bamViews
PDF		Reference Manual

Details

biocViews	ExperimentData, RNASeqData, SNPData, Saccharomyces_cerevisiae_Data, SequencingData
Version	1.26.0
License	Artistic 2.0
Depends	R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome
Imports	GenomicRanges, GenomicAlignments, methods, S4Vectors, parallel, IRanges
LinkingTo
Suggests	biomaRt, org.Sc.sgd.db, edgeR
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	EDASeq
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	leeBamViews_1.26.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/leeBamViews
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/leeBamViews
Package Short Url	https://bioconductor.org/packages/leeBamViews/
Package Downloads Report	Download Stats