methyvimData

DOI: 10.18129/B9.bioc.methyvimData    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see methyvimData.

Example experimental data for use with the methyvim package

Bioconductor version: 3.12

Contains a reduced set of simulated data inspired by data produced by the Infinium EPIC BeadChip assays by Illumina. The example data set is made available to highlight many of the key procedures that are available within the core functions of the methyvim package.

Author: Nima Hejazi [aut, cre]

Maintainer: Nima Hejazi <nhejazi at berkeley.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methyvimData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methyvimData")

 

HTML	R Script	Anatomy of the `methyvimData` package
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Clustering, DNAMethylation, DifferentialMethylation, ExperimentData, MethylSeq, MethylationArray
Version	1.12.0
License	file LICENSE
Depends	R (>= 3.4.0), minfi
Imports
LinkingTo
Suggests	Biobase, BiocStyle, SummarizedExperiment, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	methyvim
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methyvimData_1.12.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/methyvimData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/methyvimData
Package Short Url	https://bioconductor.org/packages/methyvimData/
Package Downloads Report	Download Stats