This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see Rsamtools.
Bioconductor version: 3.15
This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.
Author: Martin Morgan, Hervé Pagès, Valerie Obenchain, Nathaniel Hayden
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("Rsamtools")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Rsamtools")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rsamtools")
R Script | An introduction to Rsamtools | |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE | |
Video | pileup in Rsamtools |
Follow Installation instructions to use this package in your R session.
Source Package | Rsamtools_2.12.0.tar.gz |
Windows Binary | Rsamtools_2.12.0.zip |
macOS Binary (x86_64) | Rsamtools_2.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rsamtools |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rsamtools |
Package Short Url | https://bioconductor.org/packages/Rsamtools/ |
Package Downloads Report | Download Stats |
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