biocViews |
Annotation, DataImport, Software, Visualization |
Version |
1.56.1 |
In Bioconductor since |
BioC 2.2 (R-2.7) (14.5 years) |
License |
Artistic-2.0 + file LICENSE |
Depends |
R (>= 3.5.0), methods, GenomicRanges(>= 1.37.2) |
Imports |
XML (>= 1.98-0), BiocGenerics(>= 0.35.3), S4Vectors(>= 0.23.18), IRanges(>= 2.13.13), XVector(>= 0.19.7), GenomeInfoDb(>= 1.15.2), Biostrings(>= 2.47.6), zlibbioc, RCurl (>= 1.4-2), Rsamtools(>= 1.31.2), GenomicAlignments(>= 1.15.6), BiocIO, tools, restfulr (>= 0.0.13) |
LinkingTo |
S4Vectors, IRanges, XVector |
Suggests |
BSgenome(>= 1.33.4), humanStemCell, microRNA(>= 1.1.1), genefilter, limma, org.Hs.eg.db, hgu133plus2.db, GenomicFeatures, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit |
SystemRequirements |
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Enhances |
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URL |
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Depends On Me |
BRGenomics, BSgenome, CAGEfightR, ChIPComp, CoverageView, CSSQ, cummeRbund, EatonEtAlChIPseq, ExCluster, geneXtendeR, GenomicFiles, groHMM, Guitar, HelloRanges, IdeoViz, liftOver, MethylSeekR, ORFhunteR, r3Cseq, sequencing, StructuralVariantAnnotation, svaNUMT, svaRetro |
Imports Me |
AnnotationHubData, annotatr, APAlyzer, ASpediaFI, ATACseqQC, ballgown, BgeeCall, BindingSiteFinder, biscuiteer, BiSeq, branchpointer, BSgenome, CAGEr, casper, CexoR, ChIPanalyser, chipenrich, chipenrich.data, ChIPpeakAnno, ChIPseeker, ChromHeatMap, ChromSCape, chromswitch, circRNAprofiler, cliProfiler, CNEr, coMET, compartmap, consensusSeekeR, contiBAIT, conumee, customProDB, dasper, DeepBlueR, derfinder, DEScan2, diffHic, diffloop, diffUTR, DMCFB, DMCHMM, DMRcatedata, dmrseq, ELMER, enhancerHomologSearch, enrichTF, ensembldb, EpiCompare, epidecodeR, epigraHMM, erma, esATAC, exomePeak2, extraChIPs, fcScan, FindIT2, FLAMES, genbankr, geneAttribution, geneLenDataBase, GeneStructureTools, genomation, GenomicFeatures, GenomicInteractions, GenomicState, genotypeeval, ggbio, gmapR, gmoviz, GOTHiC, GreyListChIP, Gviz, hiAnnotator, HiCDCPlus, HiTC, HTSeqGenie, icetea, igvR, INSPEcT, InTAD, IsoformSwitchAnalyzeR, karyoploteR, m6Aboost, MACPET, MADSEQ, maser, MEDIPS, metagene, metagene2, metaseqR2, methrix, methylKit, motifbreakR, MotifDb, multicrispr, MungeSumstats, NADfinder, nearBynding, NoRCE, normr, NxtIRFcore, NxtIRFdata, ODER, OGRE, OMICsPCA, ORFik, PAST, periodicDNA, plyranges, pram, primirTSS, proBAMr, profileplyr, PureCN, qsea, QuasR, RCAS, recount, recount3, recoup, regioneR, REMP, Repitools, RGMQL, RiboProfiling, ribosomeProfilingQC, rifi, RIPAT, RLSeq, rmspc, RNAmodR, roar, scanMiRApp, SCANVIS, scDblFinder, scPipe, scruff, seqCAT, seqsetvis, sevenC, SGSeq, shinyepico, SigsPack, SingscoreAMLMutations, sitadela, soGGi, spatialLIBD, srnadiff, TFBSTools, trackViewer, transcriptR, TRESS, tRNAscanImport, TSRchitect, txcutr, VariantAnnotation, VariantTools, wavClusteR, wiggleplotr |
Suggests Me |
alpine, AnnotationHub, autonomics, BiocFileCache, biovizBase, bsseq, chipseqDB, cicero, CINdex, compEpiTools, CrispRVariants, DAMEfinder, eisaR, epimutacions, epistack, EpiTxDb.Hs.hg38, EpiTxDb.Sc.sacCer3, epivizrChart, epivizrData, FDb.FANTOM4.promoters.hg19, geneXtendeR, GenomicAlignments, GenomicDistributions, GenomicInteractionNodes, GenomicRanges, GeuvadisTranscriptExpr, goseq, gwascat, InPAS, interactiveDisplay, megadepth, methylumi, miRBaseConverter, MutationalPatterns, nanotubes, OrganismDbi, PasillaTranscriptExpr, Pi, PICS, PING, pipeFrame, plotgardener, pqsfinder, ProteoDisco, R453Plus1Toolbox, RcisTarget, rGADEM, Ringo, RNAmodR.AlkAnilineSeq, RNAmodR.ML, RNAmodR.RiboMethSeq, RnBeads, RSVSim, signeR, similaRpeak, SynExtend, systemPipeR, systemPipeRdata, TAPseq, TCGAutils, triplex, tRNAdbImport, TVTB, xcore |
Links To Me |
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Build Report |
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