BiocCheck
Bioconductor-specific package checks
Bioconductor version: Release (3.19)
BiocCheck guides maintainers through Bioconductor best practicies. It runs Bioconductor-specific package checks by searching through package code, examples, and vignettes. Maintainers are required to address all errors, warnings, and most notes produced.
Author: Bioconductor Package Maintainer [aut], Lori Shepherd [aut], Daniel von Twisk [ctb], Kevin Rue [ctb], Marcel Ramos [aut, cre] 
, Leonardo Collado-Torres [ctb], Federico Marini [ctb]
Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>
citation("BiocCheck")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocCheck")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocCheck")| BiocCheck: Ensuring Bioconductor package guidelines | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.3.0) |
| Imports | BiocBaseUtils, BiocFileCache, BiocManager, biocViews(>= 1.33.7), callr, codetools, graph, httr2, knitr, methods, rvest, stringdist, tools, utils |
| System Requirements | |
| URL | https://github.com/Bioconductor/BiocCheck |
| Bug Reports | https://github.com/Bioconductor/BiocCheck/issues |
See More
| Suggests | RUnit, BiocGenerics, Biobase, jsonlite, rmarkdown, downloader, devtools (>= 1.4.1), usethis, BiocStyle, GenomicRanges, gert |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | AnnotationHubData, gDRstyle |
| Suggests Me | GEOfastq, SpectralTAD, packFinder, preciseTAD, HMP16SData, HMP2Data, scpdata, MainExistingDatasets |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocCheck_1.40.0.tar.gz |
| Windows Binary (x86_64) | BiocCheck_1.40.0.zip |
| macOS Binary (x86_64) | BiocCheck_1.40.0.tgz |
| macOS Binary (arm64) | BiocCheck_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocCheck |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocCheck |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocCheck/ |
| Package Short Url | https://bioconductor.org/packages/BiocCheck/ |
| Package Downloads Report | Download Stats |