biocViews

Categorized views of R package repositories

Bioconductor version: Release (3.19)

Infrastructure to support 'views' used to classify Bioconductor packages. 'biocViews' are directed acyclic graphs of terms from a controlled vocabulary. There are three major classifications, corresponding to 'software', 'annotation', and 'experiment data' packages.

Author: VJ Carey <stvjc at channing.harvard.edu>, BJ Harshfield <rebjh at channing.harvard.edu>, S Falcon <sfalcon at fhcrc.org> , Sonali Arora, Lori Shepherd <lori.shepherd at roswellpark.org>

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("biocViews")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biocViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocViews")

biocViews-CreateRepositoryHTML	HTML	R Script
biocViews-HOWTO	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.72.0
In Bioconductor since	BioC 1.8 (R-2.3) (18.5 years)
License	Artistic-2.0
Depends	R (>= 3.6.0)
Imports	Biobase, graph(>= 1.9.26), methods, RBGL(>= 1.13.5), tools, utils, XML, RCurl, RUnit, BiocManager
System Requirements
URL	http://bioconductor.org/packages/biocViews
Bug Reports	https://github.com/Bioconductor/biocViews/issues

Suggests	BiocGenerics, knitr, commonmark, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	AnnotationHubData, BiocCheck, BiocPkgTools, monocle, sigFeature, RforProteomics, genetic.algo.optimizeR
Suggests Me	packFinder, plasmut, rworkflows
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biocViews_1.72.0.tar.gz
Windows Binary (x86_64)	biocViews_1.72.0.zip
macOS Binary (x86_64)	biocViews_1.72.0.tgz
macOS Binary (arm64)	biocViews_1.72.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biocViews
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biocViews
Bioc Package Browser	https://code.bioconductor.org/browse/biocViews/
Package Short Url	https://bioconductor.org/packages/biocViews/
Package Downloads Report	Download Stats